Subtracks⇓  Description⇓  Su(H) ChIP-Seq Track Settings
 
ChIP-Seq of Suppressor of Hairless Proteins   (All ChIP Seq Tracks)

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 All Study GSE59726 
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Embryos 2 4hr 
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 Su(H) Rabbit-AB IDR  Su(H) Rabbit-Antibody (2-4 hr Embryos) IDR Peaks   Schema 
 
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 Su(H) Rabbit-AB MACS2  Su(H) Rabbit-Antibody (2-4 hr Embryos) MACS2 Peaks   Schema 
 
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 Su(H) Rabbit-AB Peakzilla  Su(H) Rabbit-Antibody (2-4 hr Embryos) Peakzilla Peaks   Schema 
 
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 Su(H) Rabbit-AB logLR  Su(H) Rabbit-Antibody (2-4 hr Embryos) Log Likelihood Enrichment   Schema 
 
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 Su(H) Goat-AB IDR  Su(H) Goat-Antibody (2-4 hr Embryos) IDR Peaks   Schema 
 
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 Su(H) Goat-AB MACS2  Su(H) Goat-Antibody (2-4 hr Embryos) MACS2 Peaks   Schema 
 
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 Su(H) Goat-AB Peakzilla  Su(H) Goat-Antibody (2-4 hr Embryos) Peakzilla Peaks   Schema 
 
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 Su(H) Goat-AB logLR  Su(H) Goat-Antibody (2-4 hr Embryos) Log Likelihood Enrichment   Schema 
    8 of 8 selected

Description

These tracks show the results of the ChIP-Seq analyses of the Suppressor of hairless [Su(H)] protein. The regions that are enriched in the protein were identified by MACS2 and Peakzilla. The log likelihood ratio evidence tracks were produced by MACS2. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05.

The ChIP-Seq datasets were obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE59726.

References

Ozdemir A, Ma L, White KP, Stathopoulos A. Su(H)-mediated repression positions gene boundaries along the dorsal-ventral axis of Drosophila embryos. Dev Cell. 2014 Oct 13;31(1):100-13.

Bardet AF, Steinmann J, Bafna S, Knoblich JA, Zeitlinger J, Stark A. Identification of transcription factor binding sites from ChIP-seq data at high resolution. Bioinformatics. 2013 Nov 1;29(21):2705-13.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

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