Combined modENCODE RNA-Seq (Development) (R5) Track Settings

Combined modENCODE RNA-Seq for Multiple Developmental Stages (R5) (All RNA Seq Tracks)

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Description

This track shows the cumulative strand-specific RNA-Seq coverage for different developmental stages of D. melanogaster. The RNA-Seq coverage datasets were obtained from the ENCODE data portal at UCSC on July 2016. The alignment results for each sample were lifted from the release 5 assembly to the release 6 assembly using CrossMap.

Credits

Brown JB, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 2014 Aug 28;512(7515):393-9.

Zhao H, Sun Z, Wang J, Huang H, Kocher JP, Wang L. CrossMap: a versatile tool for coordinate conversion between genome assemblies. Bioinformatics. 2014 Apr 1;30(7):1006-7.