Schema for INSDC - Accession at INSDC - International Nucleotide Sequence Database Collaboration

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Database: dm6 Primary Table: ucscToINSDC Row Count: 1,870 Data last updated: 2020-08-21

field	example	SQL type	info
`chrom`	chrX	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	23542271	`int(10) unsigned`	range
`name`	AE014298.5	`varchar(255)`	values

Connected Tables and Joining Fields


	dm6.chromInfo.chrom (via ucscToINSDC.chrom)

Sample Rows

chrom	chromEnd	name
chrX	23542271	AE014298.5
chr2L	23513712	AE014134.6
chr2R	25286936	AE013599.5
chr3L	28110227	AE014296.5
chr3R	32079331	AE014297.3
chr4	1348131	AE014135.4
chrY	3667352	CP007106.1
chrX_CP007103v1_random	33320	CP007103.1
chrX_CP007104v1_random	27447	CP007104.1
chrX_DS483648v1_random	13940	DS483648.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

INSDC (ucscToINSDC) Track Description


	Description This track associates UCSC Genome Browser chromosome names to accession names from the International Nucleotide Sequence Database Collaboration (INSDC). The data were downloaded from the NCBI assembly database. Credits The data for this track was prepared by Hiram Clawson.

Description