Schema for Genome Mappability - Genome Mappability
  Database: dm6    Primary Table: art_619_10    Row Count: 1
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/dm6_art_619_1...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/dm6_art_619_10_HS20.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Genome Mappability (mappability) Track Description
 

Description

Simulated Illumina reads were produced by the ART read simulator using the D. melanogaster genome assembly. These simulated reads are then mapped against the D. melanogaster genome assembly using bwa with the aln algorithm.

The reads for the 50bp SE Reads (10x) track were produced using the following parameters:

--fcov 10 --noALN --rndSeed 4135 --seqSys GA2 --len 50

References

Huang W, Li L, Myers JR, Marth GT. ART: a next-generation sequencing read simulator. Bioinformatics. 2012 Feb 15;28(4):593-4.

Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010 Mar 1;26(5):589-95.